Miskei Márton

Steindorff, A. S., Cai, F. M., Ding, M., Emri, T., Miskei, M., Pócsi, I., Druzhinina, I. S.: Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture.
Nat Microbiol. 11 (3), 815-831, 2026.

Miskei, M., Ibragimova, S., Kocsis, B., Nagy, T., Park, H. S., Emri, T., Yu, J. H., Leiter, É., Pócsi, I.: Genome-Wide Mapping Reveals an Extensive AtfA Regulatory Influence on Development, Metabolism, and Stress Preparedness in Aspergillus nidulans.
Cells. 14 (24), 1-38, (article identifier: 1965), 2025.

Pákozdi, K., Antal, K., Pázmándi, K. L., Miskei, M., Szabó, Z., Pócsi, I., Emri, T.: Resynthesis of Damaged Fe-S Cluster Proteins Protects Aspergillus fumigatus Against Oxidative Stress in the Absence of Mn-Superoxide Dismutase.
J. Fungi. 10, 1-16, (article identifier: 823), 2024.

Vig, I., Benkő, Z., Gila, C. B., Palczert, Z., Jakab, Á., Nagy, F., Miskei, M., Lee, M. K., Yu, J. H., Pócsi, I., Emri, T.: Functional characterization of genes encoding cadmium pumping P1B-type ATPases in Aspergillus fumigatus and Aspergillus nidulans.
Microbiol Spectr. 11 (5), 1-14, (article identifier: 00283), 2023.

Bodnár, V., Király, A., Orosz, E., Miskei, M., Emri, T., Karányi, Z., Leiter, É., De Vries, R. P., Pócsi, I.: Species-specific effects of the introduction of Aspergillus nidulans gfdB in osmophilic aspergilli.
Appl. Microbiol. Biotechnol. 107 ((2023),), 2423-2436, 2023.

Karányi, Z., Mosolygó, Á., Feró, O., Horváth, A., Boros-Oláh, B., Nagy, É., Hetey, S., Holb, I., Szaker, H., Miskei, M., Csorba, T., Székvölgyi, L.: NODULIN HOMEOBOX is required for heterochromatin homeostasis in Arabidopsis.
Nat Comms. 13, 1-20, (article identifier: 5058), 2022.

Miskei, M., Horváth, A., Viola, L., Varga, L., Nagy, É., Feró, O., Karányi, Z., Roszik, J., Miskey, C., Ivics, Z., Székvölgyi, L.: Genome-wide mapping of binding sites of the transposase-derived SETMAR protein in the human genome.
Computational and Structural Biotechnology Journal. 19, 4032-4041, 2021.

Szabó, K., Miskei, M., Farkas, I., Dombrádi, V.: The phosphatome of opportunistic pathogen Candida species.
Fungal Biology Reviews. 35, 40-51, 2021.

Miskei, M., Horváth, A., Vendruscolo, M., Fuxreiter, M.: Sequence-Based Prediction of Fuzzy Protein Interactions.
J. Mol. Biol. 432 (7), 2289-2303, 2020.

Horváth, A., Miskei, M., Ambrus, V. A., Vendruscolo, M., Fuxreiter, M.: Sequence-based prediction of protein binding mode landscapes.
PLoS Comput. Biol. 16 (5), 1-19, (article identifier: 1007864), 2020.

Selbmann, L., Benkő, Z., Coleine, C., de Hoog, S., Donati, C., Druzhinina, I. S., Emri, T., Ettinger, C. L., Gladfelter, A. S., Gorbushina, A., Grigoriev, I. V., Grube, M., Gunde-Cimerman, N., Karányi, Z., Kocsis, B., Kubressoian, T., Miklós, I., Miskei, M., Muggia, L., Northen, T., Novak-Babič, M., Pennacchio, C., Pfliegler, V. P., Pócsi, I., Prigione, V., Riquelme, M., Segata, N., Schumacher, J., Shelest, E., Sterflinger, K., Tesei, D., U'Ren, J. M., Varese, G. C., Vázquez-Campos, X., Vicente, V. A., Souza, E. M., Zalar, P., Walker, A. K., Stajich, J. E.: Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
Life (Basel). 10 (12), 1-13, (article identifier: 362), 2020.

De Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Akemi Uchima, C., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, Ö., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Cánovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C., Clum, A., Corrêa dos, S. R. A., Lima Damásio, A. R. d., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo,, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M. L., Henrissat, B., Hildén, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kraševec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A. F., MacCabe, A., Mäkelä, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, Á. P., Mulé, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H. S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D. M., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Karaffa, E. M., Sanguinetti, M., Schütze, T., Sepčić, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F. M., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., Wiele, N. v. d., Rossen-Uffink, D. v., Velasco de, C. O. J., Vesth, T. C., Visser, J., Yu, J. H., Zhou, M., Andersen, M. R., Archer, D., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G., Fischer, R., Frisvad, J. C., Goldman, G., Houbraken, J., Oakley, B. R., Pócsi, I., Scazzocchio, C., Seiboth, B., Kuyk, P. A. v., Wortman, J. R., Dyer, P. S., Grigoriev, I. V.: Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol. 18 (28), 1-45, 2017.

Miskei, M., Antal, C., Fuxreiter, M.: FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies.
Nucleic Acids Res. 45, D228-D235, 2017.

Miskei, M., Gregus, A., Sharma, R., Duró, N., Zsólyomi, F., Fuxreiter, M.: Fuzziness enables context dependence of protein interactions.
FEBS Lett. 591 (17), 2682-2695, 2017.

Zhang, L., Zhou, Z., Guo, Q., Fokkens, L., Miskei, M., Pócsi, I., Zhang, W., Chen, M., Wang, L., Sun, Y., Donzelli, B. G. G., Gibson, D. M., Nelson, D. R., Luo, J. G., Rep, M., Liu, H., Yang, S., Wang, J., Krasnoff, S. B., Xu, Y., Molnár, I., Lin, M.: Insights into Adaptations to a Near- Obligate Nematode Endoparasitic Lifestyle from the Finished Genome of Drechmeria coniospora.
Sci Rep. 6, 23122, (article identifier: 23122), 2016.