Dániel Bence

1.

Dániel, B., Belk, J. A., Meier, S. L., Chen, A. Y., Sándor, K., Czimmerer, Z., Varga, Z., Bene, K., Buquicchio, F. A., Qi, Y., Kitano, H., Wheeler, J. R., Foster, D. S., Januszyk, M., Longaker, M. T., Chang, H. Y., Satpathy, A. T.: Macrophage inflammatory and regenerative response periodicity is programmed by cell cycle and chromatin state.
Mol. Cell. 83 (1), 121-138, 2023.

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D1 Cell Biology

D1 Molecular Biology

2.

Patsalos, A., Halász, L., Medina-Serpas, M. A., Berger, W. K., Dániel, B., Tzerpos, P., Kiss, M., Nagy, G., Fischer, C., Simándi, Z., Varga, T., Nagy, L.: A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
J. Exp. Med. 219 (1), 1-38, 2022.

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D1 Immunology

D1 Immunology and Allergy

D1 Medicine (miscellaneous)

3.

Göczi, L., Csumita, M., Horváth, A., Nagy, G., Póliska, S., Pigni, M., Thelemann, C., Dániel, B., Mianesaz, H., Varga, T., Sen, K., Raghav, S. K., Schoggins, J. W., Nagy, L., Acha-Orbea, H., Meissner, F., Reith, W., Széles, L.: A Multi-Omics Approach Reveals Features That Permit Robust and Widespread Regulation of IFN-Inducible Antiviral Effectors.
J. Immun. 209 (10), 1930-1941, 2022.

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Q1 Immunology

Q1 Immunology and Allergy

4.

Czimmerer, Z., Halász, L., Dániel, B., Varga, Z., Bene, K., Domokos, A., Hoeksema, M., Shen, Z., Berger, W. K., Silye-Cseh, T., Jambrovics, K., Kolostyák, Z., Fenyvesi, F., Váradi, J., Póliska, S., Hajas, G., Szatmári, I., Glass, C. K., Bácsi, A., Nagy, L.: The epigenetic state of IL-4-polarized macrophages enables inflammatory cistromic expansion and extended synergistic response to TLR ligands.
Immunity. 55 (11), 2006-2026, 2022.

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D1 Immunology

D1 Immunology and Allergy

D1 Infectious Diseases

5.

Dániel, B., Czimmerer, Z., Halász, L., Botó, P., Kolostyák, Z., Póliska, S., Berger, W. K., Tzerpos, P., Nagy, G., Horváth, A., Hajas, G., Silye-Cseh, T., Nagy, A., Sauer, S., Francois-Deleuze, J., Szatmári, I., Bácsi, A., Nagy, L.: The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
Genes Dev. 34 (21-22), 1474-1492, 2020.

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D1 Developmental Biology

D1 Genetics

6.

Nagy, G., Dániel, B., Cuaranta-Monroy, I., Nagy, L.: Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ.
Mol. Cell. Biol. 40 (7), 1-20, 2020.

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Q1 Cell Biology

Q1 Molecular Biology

7.

Moreira, T. G., Horta, L. S., Gomes-Santos, A. C., Oliveira, R. P., Queiroz, N. M. G. P., Mangani, D., Dániel, B., Vieira, A. T., Liu, S., Rodrigues, A. M., Gomes, D. A., Gabriely, G., Ferreira, E., Weiner, H. L., Rezende, R. M., Nagy, L., Faria, A. M. C.: CLA-supplemented diet accelerates experimental colorectal cancer by inducing TGF-β-producing macrophages and T cells.
Mucosal Immunol. 12 (1), 188-199, 2019.

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Journal metrics:

D1 Immunology

D1 Immunology and Allergy

8.

Horváth, A., Dániel, B., Széles, L., Cuaranta-Monroy, I., Czimmerer, Z., Ozgyin, L., Steiner, L., Kiss, M., Simándi, Z., Póliska, S., Giannakis, N., Raineri, E., Gut, I. G., Nagy, B., Nagy, L.: Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.
Nucleic Acids Res. 47 (6), 2778-2792, 2019.

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D1 Genetics

9.

Czimmerer, Z., Horváth, A., Dániel, B., Nagy, G., Cuaranta-Monroy, I., Kiss, M., Kolostyák, Z., Póliska, S., Steiner, L., Giannakis, N., Varga, T., Nagy, L.: Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
Biochim. Biophys. Acta. Gene Regul. Mech. 1861 (1), 14-28, 2018.

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D1 Biochemistry

D1 Biophysics

Q1 Genetics

Q1 Molecular Biology

Q1 Structural Biology

10.

Czimmerer, Z., Nagy, Z. S., Nagy, G., Horváth, A., Silye-Cseh, T., Kriston, Á., Jonás, D., Sauer, S., Steiner, L., Dániel, B., Deleuze, J. F., Nagy, L.: Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Mol. Cell. Endocrinol. 471, 63-74, 2018.

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Q1 Biochemistry

Q1 Endocrinology

Q2 Molecular Biology

11.

Dániel, B., Nagy, G., Horváth, A., Czimmerer, Z., Cuaranta-Monroy, I., Póliska, S., Hays, T. T., Sauer, S., Francois-Deleuze, J., Nagy, L.: The IL-4/STAT6/PPAR[gamma] signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
Nucleic Acids Res. 46 (9), 4425-4439, 2018.

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D1 Genetics

12.

Dániel, B., Nagy, G., Czimmerer, Z., Horváth, A., Hammers, D. W., Cuaranta-Monroy, I., Póliska, S., Tzerpos, P., Kolostyák, Z., Hays, T. T., Patsalos, A., Houtman, R., Sauer, S., Francois-Deleuze, J., Rastinejad, F., Bálint, B. L., Sweeney, H. L., Nagy, L.: The Nuclear Receptor PPAR[gamma] Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
Immunity. 49 (4), 615-626, 2018.

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D1 Immunology

D1 Immunology and Allergy

D1 Infectious Diseases

13.

Czimmerer, Z., Dániel, B., Horváth, A., Rückerl, D., Nagy, G., Kiss, M., Peloquin, M., Budai, M. M., Cuaranta-Monroy, I., Simándi, Z., Steiner, L., Nagy, B. J., Póliska, S., Bankó, C., Bacsó, Z., Schulman, I. G., Sauer, S., Deleuze, J. F., Allen, J. E., Benkő, S., Nagy, L.: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
Immunity. 48 (1), 75-90, 2018.

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D1 Immunology

D1 Immunology and Allergy

D1 Infectious Diseases

14.

Kiss, M., Czimmerer, Z., Nagy, G., Bieniasz-Krzywiec, P., Ehling, M., Pap, A., Póliska, S., Botó, P., Tzerpos, P., Horváth, A., Kolostyák, Z., Dániel, B., Szatmári, I., Mazzone, M., Nagy, L.: Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism.
Proc. Natl. Acad. Sci. U. S. A. 114 (40), 10725-10730, 2017.

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D1 Multidisciplinary

15.

Varga, T., Mounier, R., Patsalos, A., Gogolák, P., Peloquin, M., Horváth, A., Pap, A., Dániel, B., Nagy, G., Pintye, É., Póliska, S., Cuvellier, S., Ben Larbi, S., Sansbury, B. E., Spite, M., Brown, C. W., Chazaud, B., Nagy, L.: Macrophage PPAR[gamma], a Lipid Activated Transcription Factor Controls the Growth Factor GDF3 and Skeletal Muscle Regeneration.
Immunity. 45 (5), 1038-1051, 2016.

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D1 Immunology

D1 Immunology and Allergy

D1 Infectious Diseases

16.

Roqueta-Rivera, M., Esquejo, R. M., Phelan, P. E., Sándor, K., Dániel, B., Foufelle, F., Ding, J., Li, X., Khorasanizadeh, S., Osborne, T. F.: SETDB2 Links Glucocorticoid to Lipid Metabolism through Insig2a Regulation.
Cell Metab. 24 (3), 474-484, 2016.

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D1 Cell Biology

D1 Molecular Biology

D1 Physiology

17.

Czimmerer, Z., Varga, T., Kiss, M., Vázquez, C. O., Doan-Xuan, Q. M., Rückerl, D., Tattikota, S. G., Yan, X., Nagy, Z. S., Dániel, B., Póliska, S., Horváth, A., Nagy, G., Varallyay, É., Poy, M. N., Allen, J. E., Bacsó, Z., Abreu-Goodger, C., Nagy, L.: The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p.
Genome Med. 8 (1), 1-22, 2016.

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D1 Genetics

D1 Genetics (clinical)

D1 Molecular Biology

D1 Molecular Medicine

18.

Sándor, K., Dániel, B., Kiss, B., Kovács, F., Szondy, Z.: Transcriptional control of transglutaminase 2 expression in mouse apoptotic thymocytes.
Biochim. Biophys. Acta. Gene Regul. Mech. 1859 (8), 964-974, 2016.

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D1 Biochemistry

D1 Biophysics

D1 Genetics

D1 Molecular Biology

Q1 Structural Biology

19.

Brázda, P., Krieger, J. W., Dániel, B., Jonás, D., Szekeres, T., Langowski, J., Tóth, K. Á., Nagy, L., Vámosi, G.: Ligand binding shifts highly mobile RXR to chromatin-bound state in a coactivator-dependent manner as revealed by single cell imaging.
Mol. Cell. Biol. 34 (7), 1234-1245, 2014.

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D1 Cell Biology

D1 Molecular Biology

20.

Dániel, B., Bálint, B. L., Nagy, Z., Nagy, L.: Mapping the genomic binding sites of the activated retinoid x receptor in murine bone marrow-derived macrophages using chromatin immunoprecipitation sequencing.
Methods. Mol. Biol. 1204, 15-24, 2014.

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Q3 Genetics

Q3 Molecular Biology

21.

Dániel, B., Nagy, G., Hah, N., Horváth, A., Czimmerer, Z., Póliska, S., Gyuris, T., Keirsse, J., Gysemans, C., Van Ginderachter, J. A., Bálint, B. L., Evans, R. M., Barta, E., Nagy, L.: The active enhancer network operated by liganded RXR supports angiogenic activity in macrophages.
Genes Dev. 28 (14), 1562-1577, 2014.

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D1 Developmental Biology

D1 Genetics

22.

Dániel, B., Nagy, G., Nagy, L.: The intriguing complexities of mammalian gene regulation: how to link enhancers to regulated genes. Are we there yet?.
FEBS Lett. 588 (15), 2379-2391, 2014.

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Q1 Biochemistry

D1 Biophysics

Q2 Cell Biology

Q1 Genetics

Q2 Molecular Biology

Q2 Structural Biology

23.

Nagy, G., Dániel, B., Jonás, D., Nagy, L., Barta, E.: A novel method to predict regulatory regions based on histone mark landscapes in macrophages.
Immunobiology. 218 (11), 1416-1427, 2013.

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Q1 Hematology

Q2 Immunology

Q1 Immunology and Allergy

24.

Brignull, L. M., Czimmerer, Z., Saidi, H., Dániel, B., Villela, I., Bartlett, N. W., Johnston, S. L., Meira, L. B., Nagy, L., Nohturfft, A.: Reprogramming of lysosomal gene expression by interleukin-4 and Stat6.
BMC Genomics. 14 (1), 1-20, 2013.

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D1 Biotechnology

Q1 Genetics

Publication list