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Nagy Gergely

Nagy Gergely

Publication list

Tudóstér co-authors statistics filterable publication list
Uploaded publications:
33
Publications in DEA:
33
OA:
20
Date range:
2010-2026
2026
1.
Tzerpos, P., Bojcsuk, D., Bene, K., Caballero-Sánchez, N., Parteka-Tojek, Z., Banecki, K., Korsak, S., Pritchett, S. M., Patsalos, A., Oleksak, D., Berger, W. K., Sarris, M. E., Giannakis, N., Chantalat, S., Silye-Cseh, T., Papachristou, E. K., Erdélyi, F., Máté, Z., Szabó, G., Nagy, G., Carroll, J. S., Spilianakis, C. G., Schwabe, J. W. R., Plewczynski, D., Nagy, L.: BACH1 acts as a pioneer repressor to enable macrophage plasticity and adaptation across tissues and inflammatory contexts.
Immunity. "Accepted by Publisher", 2026.
DEA
Journal metrics:
D1 Immunology (2025)
D1 Immunology and Allergy (2025)
D1 Infectious Diseases (2025)
2.
Caballero-Sánchez, N., Tzerpos, P., Bene, K., Halász, L., Bojcsuk, D., Nagy, G., Ali, M. A., Silye-Cseh, T., Póliska, S., Borok, M. J., Scherer, J., Relaix, F., Saez, E., Czimmerer, Z., Patsalos, A., Nagy, L.: BACH1 orchestrates macrophage state transitions to coordinate regenerative inflammation.
J. Immunol. "Accepted by Publisher", 2026.
doi DEA
Journal metrics:
Q1 Immunology (2025)
Q1 Immunology and Allergy (2025)
3.
Mianesaz, H., Göczi, L., Bojcsuk, D., Ghalamkari, S., Fadel, L., Póliska, S., Penyige, A., Nagy, L., Nagy, G., Vámosi, G., Széles, L.: Genome-wide chromatin profiling reveals a non-limiting role for RXR in macrophage-like cells stimulated with multiple nuclear receptor agonists.
J. Biol Chem. [Epub ahead of print], 2026.
DEA
Journal metrics:
Q1 Biochemistry (2025)
Q1 Cell Biology (2025)
Q1 Molecular Biology (2025)
2025
4.
Baráth, B. R., Bojcsuk, D., Bene, K., Caballero-Sánchez, N., Silye-Cseh, T., de Freitas, J. C., Tzerpos, P., Tóth, M., Tang, Z., Guller, S., Krasznai, Z. T., Neuperger, P., Szebeni, G. J., Nagy, G., Deli, T., Nagy, L.: Distinct transcriptional and epigenomic programs define Hofbauer cells in term placenta.
JCI Insight. 11 (3), 1-21, (article identifier: 195801), 2025.
doi DEA WoS Scopus
Journal metrics:
D1 Medicine (miscellaneous)
5.
Hrubi, E., Tóth, F., Nagy, G., Tőzsér, J., Hegedűs, C.: Evaluation of Human Dental Pulp Stem Cells Expressing BMP2/7 Heterodimers in a Doxycycline-Inducible Manner.
Biomolecules. 15 (12), 1-16, (article identifier: 1704), 2025.
doi DEA WoS Scopus
Journal metrics:
Q1 Biochemistry
Q2 Molecular Biology
6.
Mianesaz, H., Göczi, L., Nagy, G., Póliska, S., Fadel, L., Bojcsuk, D., Penyige, A., Szirák, K., AlHaman, F., Nagy, L., Vámosi, G., Széles, L.: Genomic regions occupied by both RARα and VDR are involved in the convergence and cooperation of retinoid and vitamin D signaling pathways.
Nucleic Acids Res. 53 (6), 1-20, (article identifier: 230), 2025.
doi DEA WoS Scopus
Journal metrics:
D1 Genetics
2024
7.
Nagy, G., Bojcsuk, D., Tzerpos, P., Silye-Cseh, T., Nagy, L.: Lineage-determining transcription factor-driven promoters regulate cell type-specific macrophage gene expression.
Nucleic Acids Res. 52 (8), 4234-4256, 2024.
doi DEA WoS Scopus
Journal metrics:
D1 Genetics
8.
Patsalos, A., Halász, L., Oleksak, D., Wei, X., Nagy, G., Tzerpos, P., Conrad, T., Hammers, D. W., Sweeney, H. L., Nagy, L.: Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture.
J. Clin. Invest. 134 (20), 1-20, (article identifier: 173858), 2024.
doi DEA WoS Scopus
Journal metrics:
D1 Medicine (miscellaneous)
2023
9.
Domokos, A., Varga, Z., Jambrovics, K., Caballero-Sánchez, N., Szabó, E., Nagy, G., Scholtz, B., Halász, L., Váradi, E., Bene, K., Türk-Mázló, A., Bácsi, A., Jeney, V., Szebeni, G. J., Nagy, L., Czimmerer, Z.: The transcriptional control of the VEGFA-VEGFR1 (FLT1) axis in alternatively polarized murine and human macrophages.
Front. Immunol. 14, 1-20, (article identifier: 1168635), 2023.
doi DEA WoS Scopus
Journal metrics:
Q1 Immunology
Q1 Immunology and Allergy
2022
10.
Patsalos, A., Halász, L., Medina-Serpas, M. A., Berger, W. K., Dániel, B., Tzerpos, P., Kiss, M., Nagy, G., Fischer, C., Simándi, Z., Varga, T., Nagy, L.: A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
J. Exp. Med. 219 (1), 1-38, (article identifier: 20210420), 2022.
doi DEA WoS Scopus
Journal metrics:
D1 Immunology
D1 Immunology and Allergy
D1 Medicine (miscellaneous)
11.
Göczi, L., Csumita, M., Horváth, A., Nagy, G., Póliska, S., Pigni, M., Thelemann, C., Dániel, B., Mianesaz, H., Varga, T., Sen, K., Raghav, S. K., Schoggins, J. W., Nagy, L., Acha-Orbea, H., Meissner, F., Reith, W., Széles, L.: A Multi-Omics Approach Reveals Features That Permit Robust and Widespread Regulation of IFN-Inducible Antiviral Effectors.
J. Immun. 209 (10), 1930-1941, 2022.
doi DEA WoS Scopus
Journal metrics:
Q1 Immunology
Q1 Immunology and Allergy
2020
12.
Fadel, L., Rehó, B., Volkó, J., Bojcsuk, D., Kolostyák, Z., Nagy, G., Müller, G., Simándi, Z., Hegedűs, É., Szabó, G., Tóth, K., Nagy, L., Vámosi, G.: Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.
J. Biol. Chem. 295 (29), 10045-10061, 2020.
doi DEA WoS Scopus
Journal metrics:
D1 Biochemistry
Q1 Cell Biology
Q1 Molecular Biology
13.
Bojcsuk, D., Nagy, G., Bálint, B. L.: Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines.
Int. J. Mol. Sci. 21, 1-18, (article identifier: 1630), 2020.
doi DEA WoS Scopus
Journal metrics:
Q2 Catalysis
D1 Computer Science Applications
D1 Inorganic Chemistry
Q1 Medicine (miscellaneous)
Q2 Molecular Biology
D1 Organic Chemistry
D1 Physical and Theoretical Chemistry
D1 Spectroscopy
14.
Nagy, G., Nagy, L.: Motif grammar: the basis of the language of gene expression.
Computational and Structural Biotechnology Journal. 18, 2026-2032, 2020.
doi DEA WoS Scopus
Journal metrics:
Q1 Biochemistry
D1 Biophysics
D1 Biotechnology
D1 Computer Science Applications
Q1 Genetics
Q2 Structural Biology
15.
Csumita, M., Csermely, A., Horváth, A., Nagy, G., Monori, F., Göczi, L., Orbea, H. A., Reith, W., Széles, L.: Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5' and 3' flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion.
Nucleic Acids Res. 48 (2), 589-604, 2020.
doi DEA WoS Scopus
Journal metrics:
D1 Genetics
16.
Dániel, B., Czimmerer, Z., Halász, L., Botó, P., Kolostyák, Z., Póliska, S., Berger, W. K., Tzerpos, P., Nagy, G., Horváth, A., Hajas, G., Silye-Cseh, T., Nagy, A., Sauer, S., Francois-Deleuze, J., Szatmári, I., Bácsi, A., Nagy, L.: The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
Genes Dev. 34 (21-22), 1474-1492, 2020.
doi DEA WoS Scopus
Journal metrics:
D1 Developmental Biology
D1 Genetics
17.
Nagy, G., Dániel, B., Cuaranta-Monroy, I., Nagy, L.: Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ.
Mol. Cell. Biol. 40 (7), 1-20, (article identifier: 00547), 2020.
doi DEA
Journal metrics:
Q1 Cell Biology
Q1 Molecular Biology
2019
18.
Patsalos, A., Tzerpos, P., Halász, L., Nagy, G., Pap, A., Giannakis, N., Lyroni, K., Koliaraki, V., Pintye, É., Dezső, B., Kollias, G., Spilianakis, C. G., Nagy, L.: The BACH1-HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration.
J. Immunol. 203 (6), 1532-1547, 2019.
doi DEA
Journal metrics:
Q1 Immunology
Q1 Immunology and Allergy
2018
19.
Czimmerer, Z., Horváth, A., Dániel, B., Nagy, G., Cuaranta-Monroy, I., Kiss, M., Kolostyák, Z., Póliska, S., Steiner, L., Giannakis, N., Varga, T., Nagy, L.: Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
Biochim. Biophys. Acta. Gene Regul. Mech. 1861 (1), 14-28, 2018.
doi DEA WoS Scopus
Journal metrics:
D1 Biochemistry
D1 Biophysics
Q1 Genetics
Q1 Molecular Biology
Q1 Structural Biology
20.
Czimmerer, Z., Nagy, Z. S., Nagy, G., Horváth, A., Silye-Cseh, T., Kriston, Á., Jonás, D., Sauer, S., Steiner, L., Dániel, B., Deleuze, J. F., Nagy, L.: Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Mol. Cell. Endocrinol. 471, 63-74, 2018.
doi DEA
Journal metrics:
Q1 Biochemistry
Q1 Endocrinology
Q2 Molecular Biology
21.
Dániel, B., Nagy, G., Horváth, A., Czimmerer, Z., Cuaranta-Monroy, I., Póliska, S., Hays, T. T., Sauer, S., Francois-Deleuze, J., Nagy, L.: The IL-4/STAT6/PPAR[gamma] signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
Nucleic Acids Res. 46 (9), 4425-4439, 2018.
doi DEA WoS Scopus
Journal metrics:
D1 Genetics
22.
Dániel, B., Nagy, G., Czimmerer, Z., Horváth, A., Hammers, D. W., Cuaranta-Monroy, I., Póliska, S., Tzerpos, P., Kolostyák, Z., Hays, T. T., Patsalos, A., Houtman, R., Sauer, S., Francois-Deleuze, J., Rastinejad, F., Bálint, B. L., Sweeney, H. L., Nagy, L.: The Nuclear Receptor PPAR[gamma] Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
Immunity. 49 (4), 615-626, 2018.
doi DEA WoS Scopus
Journal metrics:
D1 Immunology
D1 Immunology and Allergy
D1 Infectious Diseases
23.
Czimmerer, Z., Dániel, B., Horváth, A., Rückerl, D., Nagy, G., Kiss, M., Peloquin, M., Budai, M. M., Cuaranta-Monroy, I., Simándi, Z., Steiner, L., Nagy, B. J., Póliska, S., Bankó, C., Bacsó, Z., Schulman, I. G., Sauer, S., Deleuze, J. F., Allen, J. E., Benkő, S., Nagy, L.: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
Immunity. 48 (1), 75-90, 2018.
doi DEA WoS Scopus
Journal metrics:
D1 Immunology
D1 Immunology and Allergy
D1 Infectious Diseases
2017
24.
Bojcsuk, D., Nagy, G., Bálint, B. L.: Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements.
Nucleic Acids Res. 45 (7), 3693-3706, 2017.
doi DEA WoS Scopus
Journal metrics:
D1 Genetics
25.
Kiss, M., Czimmerer, Z., Nagy, G., Bieniasz-Krzywiec, P., Ehling, M., Pap, A., Póliska, S., Botó, P., Tzerpos, P., Horváth, A., Kolostyák, Z., Dániel, B., Szatmári, I., Mazzone, M., Nagy, L.: Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism.
Proc. Natl. Acad. Sci. U. S. A. 114 (40), 10725-10730, 2017.
doi DEA
Journal metrics:
D1 Multidisciplinary
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