The library will operate on a duty schedule between 22 December 2025 and 4 January 2026. During this period, it will be possible to upload publications, but all other services will be suspended.
Patsalos, A.,
Halász, L.,
Oleksak, D.,
Wei, X.,
Nagy, G.,
Tzerpos, P.,
Conrad, T.,
Hammers, D. W.,
Sweeney, H. L.,
Nagy, L.:
Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture.
J. Clin. Invest. 134 (20), 1-20, (article identifier: 173858), 2024.
Patsalos, A.,
Halász, L.,
Medina-Serpas, M. A.,
Berger, W. K.,
Dániel, B.,
Tzerpos, P.,
Kiss, M.,
Nagy, G.,
Fischer, C.,
Simándi, Z.,
Varga, T.,
Nagy, L.:
A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
J. Exp. Med. 219 (1), 1-38, (article identifier: 20210420), 2022.
Göczi, L.,
Csumita, M.,
Horváth, A.,
Nagy, G.,
Póliska, S.,
Pigni, M.,
Thelemann, C.,
Dániel, B.,
Mianesaz, H.,
Varga, T.,
Sen, K.,
Raghav, S. K.,
Schoggins, J. W.,
Nagy, L.,
Acha-Orbea, H.,
Meissner, F.,
Reith, W.,
Széles, L.:
A Multi-Omics Approach Reveals Features That Permit Robust and Widespread Regulation of IFN-Inducible Antiviral Effectors.
J. Immun. 209 (10), 1930-1941, 2022.
Bojcsuk, D.,
Nagy, G.,
Bálint, B. L.:
Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines.
Int. J. Mol. Sci. 21, 1-18, (article identifier: 1630), 2020.
Nagy, G.,
Nagy, L.:
Motif grammar: the basis of the language of gene expression.
Computational and Structural Biotechnology Journal. 18, 2026-2032, 2020.
Csumita, M.,
Csermely, A.,
Horváth, A.,
Nagy, G.,
Monori, F.,
Göczi, L.,
Orbea, H. A.,
Reith, W.,
Széles, L.:
Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5' and 3' flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion.
Nucleic Acids Res. 48 (2), 589-604, 2020.
Nagy, G.,
Dániel, B.,
Cuaranta-Monroy, I.,
Nagy, L.:
Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ.
Mol. Cell. Biol. 40 (7), 1-20, (article identifier: 00547), 2020.
Patsalos, A.,
Tzerpos, P.,
Halász, L.,
Nagy, G.,
Pap, A.,
Giannakis, N.,
Lyroni, K.,
Koliaraki, V.,
Pintye, É.,
Dezső, B.,
Kollias, G.,
Spilianakis, C. G.,
Nagy, L.:
The BACH1-HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration.
J. Immunol. 203 (6), 1532-1547, 2019.
Czimmerer, Z.,
Horváth, A.,
Dániel, B.,
Nagy, G.,
Cuaranta-Monroy, I.,
Kiss, M.,
Kolostyák, Z.,
Póliska, S.,
Steiner, L.,
Giannakis, N.,
Varga, T.,
Nagy, L.:
Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
Biochim. Biophys. Acta. Gene Regul. Mech. 1861 (1), 14-28, 2018.
Czimmerer, Z.,
Nagy, Z. S.,
Nagy, G.,
Horváth, A.,
Silye-Cseh, T.,
Kriston, Á.,
Jonás, D.,
Sauer, S.,
Steiner, L.,
Dániel, B.,
Deleuze, J. F.,
Nagy, L.:
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Mol. Cell. Endocrinol. 471, 63-74, 2018.
Dániel, B.,
Nagy, G.,
Horváth, A.,
Czimmerer, Z.,
Cuaranta-Monroy, I.,
Póliska, S.,
Hays, T. T.,
Sauer, S.,
Francois-Deleuze, J.,
Nagy, L.:
The IL-4/STAT6/PPAR[gamma] signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
Nucleic Acids Res. 46 (9), 4425-4439, 2018.
Dániel, B.,
Nagy, G.,
Czimmerer, Z.,
Horváth, A.,
Hammers, D. W.,
Cuaranta-Monroy, I.,
Póliska, S.,
Tzerpos, P.,
Kolostyák, Z.,
Hays, T. T.,
Patsalos, A.,
Houtman, R.,
Sauer, S.,
Francois-Deleuze, J.,
Rastinejad, F.,
Bálint, B. L.,
Sweeney, H. L.,
Nagy, L.:
The Nuclear Receptor PPAR[gamma] Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
Immunity. 49 (4), 615-626, 2018.
Bojcsuk, D.,
Nagy, G.,
Bálint, B. L.:
Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements.
Nucleic Acids Res. 45 (7), 3693-3706, 2017.
Varga, T.,
Mounier, R.,
Patsalos, A.,
Gogolák, P.,
Peloquin, M.,
Horváth, A.,
Pap, A.,
Dániel, B.,
Nagy, G.,
Pintye, É.,
Póliska, S.,
Cuvellier, S.,
Ben Larbi, S.,
Sansbury, B. E.,
Spite, M.,
Brown, C. W.,
Chazaud, B.,
Nagy, L.:
Macrophage PPAR[gamma], a Lipid Activated Transcription Factor Controls the Growth Factor GDF3 and Skeletal Muscle Regeneration.
Immunity. 45 (5), 1038-1051, 2016.
Nagy, G.,
Czipa, E.,
Steiner, L.,
Nagy, T.,
Pongor, S.,
Nagy, L.,
Barta, E.:
Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA.
BMC Genomics. 17 (637), 1-9, 2016.
Czimmerer, Z.,
Varga, T.,
Kiss, M.,
Vázquez, C. O.,
Doan-Xuan, Q. M.,
Rückerl, D.,
Tattikota, S. G.,
Yan, X.,
Nagy, Z. S.,
Dániel, B.,
Póliska, S.,
Horváth, A.,
Nagy, G.,
Varallyay, É.,
Poy, M. N.,
Allen, J. E.,
Bacsó, Z.,
Abreu-Goodger, C.,
Nagy, L.:
The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p.
Genome Med. 8 (1), 1-22, 2016.
