MTA-DE LENDÜLET Protein Dynamics Research Group

1.

Ambrus, V. A., Hoffka, G., Fuxreiter, M.: Asymmetric dynamic coupling promotes alternative evolutionary pathways in an enzyme dimer.
Sci. Rep. 10 (1), 1-9, 2020.

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Journal metrics:

D1 Multidisciplinary

2.

Fuxreiter, M.: Classifying the Binding Modes of Disordered Proteins.
Int. J. Mol. Sci. 21 (22), 1-9, 2020.

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Journal metrics:

Q2 Catalysis

D1 Computer Science Applications

D1 Inorganic Chemistry

Q1 Medicine (miscellaneous)

Q2 Molecular Biology

D1 Organic Chemistry

D1 Physical and Theoretical Chemistry

D1 Spectroscopy

3.

Fuxreiter, M.: Fuzzy protein theory for disordered proteins.
Biochem. Soc. Trans. 48 (6), 2557-2564, 2020.

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Journal metrics:

D1 Biochemistry

4.

Zsólyomi, F., Ambrus, V. A., Fuxreiter, M.: Patterns of Dynamics Comprise a Conserved Evolutionary Trait.
J. Mol. Biol. 432 (2), 497-507, 2020.

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Journal metrics:

D1 Biophysics

Q1 Molecular Biology

Q1 Structural Biology

5.

Kubatova, N., Pyper, D. J., Jonker, H. R. A., Saxena, K., Remmel, L., Richter, C., Brantl, S., Evguenieva-Hackenberg, E., Hess, W. R., Klug, G., Marchfelder, A., Soppa, J., Streit, W., Mayzel, M., Orekhov, V. Y., Fuxreiter, M., Schmitz, R. A., Schwalbe, H.: Rapid Biophysical Characterization and NMR Spectroscopy Structural Analysis of Small Proteins from Bacteria and Archaea.
ChemBioChem. 21 (8), 1178-1187, 2020.

doi DEA

Journal metrics:

Q2 Biochemistry

Q2 Molecular Biology

Q2 Molecular Medicine

Q1 Organic Chemistry

6.

Miskei, M., Horváth, A., Vendruscolo, M., Fuxreiter, M.: Sequence-Based Prediction of Fuzzy Protein Interactions.
J. Mol. Biol. 432 (7), 2289-2303, 2020.

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Journal metrics:

D1 Biophysics

Q1 Molecular Biology

Q1 Structural Biology

7.

Horváth, A., Miskei, M., Ambrus, V. A., Vendruscolo, M., Fuxreiter, M.: Sequence-based prediction of protein binding mode landscapes.
PLoS Comput. Biol. 16 (5), 1-19, 2020.

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Journal metrics:

D1 Ecology, Evolution, Behavior and Systematics

Q1 Cellular and Molecular Neuroscience

D1 Computational Theory and Mathematics

D1 Ecology

Q1 Genetics

D1 Modeling and Simulation

Q1 Molecular Biology

8.

Bozóki, B., Mótyán, J. A., Hoffka, G., Waugh, D. S., Tőzsér, J.: Specificity Studies of the Venezuelan Equine Encephalitis Virus Non-Structural Protein 2 Protease Using Recombinant Fluorescent Substrates.
Int. J. Mol. Sci. 21 (20), 1-26, 2020.

doi DEA WoS Scopus

Journal metrics:

Q2 Catalysis

D1 Computer Science Applications

D1 Inorganic Chemistry

Q1 Medicine (miscellaneous)

Q2 Molecular Biology

D1 Organic Chemistry

D1 Physical and Theoretical Chemistry

D1 Spectroscopy

9.

Hardenberg, M., Horváth, A., Ambrus, V. A., Fuxreiter, M., Vendruscolo, M.: Widespread occurrence of the droplet state of proteins in the human proteome.
Proc. Natl. Acad. Sci. U. S. A. 117 (52), 33254-33262-, 2020.

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Journal metrics:

D1 Multidisciplinary

10.

Tüű-Szabó, B., Hoffka, G., Duró, N., Fuxreiter, M.: Altered dynamics may drift pathological fibrillization in membraneless organelles.
Biochim. Biophys. Acta. Proteins Proteom. 1867 (10), 988-998, 2019.

doi DEA

Journal metrics:

Q1 Analytical Chemistry

Q2 Biochemistry

Q1 Biophysics

Q2 Molecular Biology

11.

Fuxreiter, M.: Fold or not to fold upon binding - does it really matter?.
Curr. Opin. Struct. Biol. 54, 19-25, 2019.

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Journal metrics:

D1 Molecular Biology

D1 Structural Biology

12.

Sharma, R., Demény, M. Á., Ambrus, V. A., Király, S. B., Kurtán, T., Gatti-Lafranconi, P., Fuxreiter, M.: Specific and fuzzy interactions cooperate in modulating protein half-life.
J. Mol. Biol. 431 (8), 1700-1707, 2019.

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Journal metrics:

D1 Biophysics

D1 Molecular Biology

Q1 Structural Biology

13.

Emri, T., Antal, K., Riley, R., Karányi, Z., Miskei, M., Orosz, E., Baker, S. E., Wiebenga, A., De Vries, R. P., Pócsi, I.: Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance.
Stud. Mycol. 91, 23-36, 2018.

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Journal metrics:

D1 Agricultural and Biological Sciences (miscellaneous)

D1 Plant Science

14.

Troilo, F., Bignon, C., Gianni, S., Fuxreiter, M., Longhi, S.: Experimental Characterization of Fuzzy Protein Assemblies: Interactions of Paramyxoviral NTAIL Domains With Their Functional Partners.
In: Intrinsically Disordered Proteins / edited by Elizabeth Rhoades, Academic Press, New York, 137-192, 2018, (Methods In Enzymology, ISSN 0076-6879 ; 611.) ISBN: 9780128156490

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15.

Fuxreiter, M.: Fuzziness in Protein Interactions: a Historical Perspective.
J. Mol. Biol. 430 (16), 2278-2287, 2018.

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Journal metrics:

D1 Molecular Biology

Q1 Structural Biology

16.

Tüű-Szabó, B., Kóczy, L., Fuxreiter, M.: Simulations of higher-order protein assemblies using a fuzzy framework.
BioRxiv 2018, 1-10, 2018.

doi DEA

17.

Tüű-Szabó, B., Kóczy, L., Fuxreiter, M.: Simulations of Higher-Order Protein Organizations Using a Fuzzy Framework.
Complexity. 2018, 1-11, 2018.

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Journal metrics:

Q1 Multidisciplinary

18.

Fuxreiter, M.: Towards a Stochastic Paradigm: from Fuzzy Ensembles to Cellular Functions.
Molecules. 23 (11), 1-10, 2018.

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Journal metrics:

Q2 Analytical Chemistry

Q1 Chemistry (miscellaneous)

Q2 Drug Discovery

Q2 Medicine (miscellaneous)

Q3 Molecular Medicine

Q2 Organic Chemistry

Q1 Pharmaceutical Science

Q2 Physical and Theoretical Chemistry

19.

Hegyi, B., Horváth, B., Váczi, K., Gönczi, M., Kistamás, K., Ruzsnavszky, F., Veress, R., Izu, L. T., Chen-Izu, Y., Bányász, T., Magyar, J., Csernoch, L., Nánási, P. P., Szentandrássy, N.: Ca2+-activated Cl- current is antiarrhythmic by reducing both spatial and temporal heterogeneity of cardiac repolarization.
J. Mol. Cell. Cardiol. 109, 27-37, 2017.

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Journal metrics:

D1 Cardiology and Cardiovascular Medicine

Q1 Molecular Biology

20.

De Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Akemi Uchima, C., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, Ö., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Cánovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C., Clum, A., Corrêa dos, S. R. A., Lima Damásio, A. R. d., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo,, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M. L., Henrissat, B., Hildén, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kraševec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A. F., MacCabe, A., Mäkelä, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, Á. P., Mulé, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H. S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D. M., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Karaffa, E. M., Sanguinetti, M., Schütze, T., Sepčić, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F. M., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., Wiele, N. v. d., Rossen-Uffink, D. v., Velasco de, C. O. J., Vesth, T. C., Visser, J., Yu, J. H., Zhou, M., Andersen, M. R., Archer, D., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G., Fischer, R., Frisvad, J. C., Goldman, G., Houbraken, J., Oakley, B. R., Pócsi, I., Scazzocchio, C., Seiboth, B., Kuyk, P. A. v., Wortman, J. R., Dyer, P. S., Grigoriev, I. V.: Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol. 18 (28), 1-45, 2017.

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Journal metrics:

D1 Cell Biology

D1 Ecology, Evolution, Behavior and Systematics

D1 Genetics

21.

Thangaraju, K., Király, R., Mótyán, J. A., Ambrus, V. A., Fuxreiter, M., Fésüs, L.: Computational analyses of the effect of novel amino acid clusters of human transglutaminase 2 on its structure and function.
Amino Acids. 49, 605-614, 2017.

doi DEA

Journal metrics:

Q2 Biochemistry

Q1 Clinical Biochemistry

Q1 Organic Chemistry

22.

Miskei, M., Antal, C., Fuxreiter, M.: FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies.
Nucleic Acids Res. 45, D228-D235, 2017.

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Journal metrics:

D1 Genetics

23.

Miskei, M., Gregus, A., Sharma, R., Duró, N., Zsólyomi, F., Fuxreiter, M.: Fuzziness enables context dependence of protein interactions.
FEBS Lett. 591 (17), 2682-2695, 2017.

doi DEA

Journal metrics:

Q1 Biochemistry

D1 Biophysics

Q2 Cell Biology

Q1 Genetics

Q2 Molecular Biology

Q2 Structural Biology

24.

Thangaraju, K., Király, R., Demény, M. Á., Mótyán, J. A., Fuxreiter, M., Fésüs, L.: Genomic variants reveal differential evolutionary constraints on human transglutaminases and point towards unrecognized significance of transglutaminase 2.
PLoS One. 12 (3), 1-24, 2017.

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Journal metrics:

Q1 Agricultural and Biological Sciences (miscellaneous)

Q1 Biochemistry, Genetics and Molecular Biology (miscellaneous)

Q1 Medicine (miscellaneous)

25.

Szentandrássy, N., Hegyi, B., Horváth, B., Váczi, K., Gönczi, M., Dienes, B., Kistamás, K., Veress, R., Ruzsnavszky, F., Bányász, T., Magyar, J., Baczkó, I., Varró, A., Seprényi, G., Csernoch, L., Nánási, P. P.: Recent advances in research of cardiac calcium-activated chloride channels.
Acta Physiol. 221 (S713), 22, 2017.

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MTA-DE LENDÜLET Protein Dynamics Research Group

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